GREAT | GREAT:SCAN:PreCisIon

GREAT:SCAN:PreCisIon is a multi-view learning algorithm for Transcription Factor Biding Site (TFBS) prediction which combines sequence motif information with gene positioning information.

Please see the help page for information on input data and produced results. If you come across an issue, do not hesitate to get in touch with us.

Data

Organism

Transcription factor

Try with example data

Settings

Position classifier

Position threshold

Genome length (bp)

Sequence classifier

Sequence threshold

TF motif length (bp)

Nb: take a look at this page from RegulonDB if you don't know the motif length for your TF (E. coli).

Boosting

Quantile

Number of iterations

Visualization

Cluster exponent

Minimum cluster size